Home

Rosace of the packages for project /java_jmol



Sub directories for project /java_jmol
repertoiredemo/
Source file including corrections in text format for project /java_jmol
Name of the file
Size____(ko)
Total CWE
Very High
Total
Very High
QC-VHIGH
High
Total
High
QC-HIGH
Medium
Total
Medium
QC-MEDIUM
Low
Total
Low
QC-LOW
Security
errors
Deadlock
errors
org.jmol.adapter.readers.cifpdb.CifReader.java(265.14 ko)1480126714
org.jmol.adapter.readers.cifpdb.PdbReader.java(118.17 ko)970671911
org.jmol.adapter.readers.xml.XmlArgusReader.java(34.98 ko)2301823
org.jmol.adapter.readers.xml.XmlChem3dReader.java(31.91 ko)2231207
org.jmol.adapter.readers.xml.XmlCmlReader.java(146.60 ko)148014305
org.jmol.adapter.readers.xml.XmlMolproReader.java(26.22 ko)2301535
org.jmol.adapter.readers.xml.XmlOdysseyReader.java(36.09 ko)3302805
org.jmol.adapter.readers.xml.XmlReader.java(62.06 ko)6305705
org.jmol.adapter.smarter.Atom.java(26.04 ko)340950
org.jmol.adapter.smarter.AtomSetCollection.java(257.26 ko)1690905720
org.jmol.adapter.smarter.AtomSetCollectionReader.java(104.02 ko)5803239
org.jmol.adapter.smarter.Bond.java(2.39 ko)30000
org.jmol.adapter.smarter.Resolver.java(145.36 ko)16201252511
org.jmol.adapter.smarter.SmarterJmolAdapter.java(151.10 ko)114010554
org.jmol.adapter.smarter.Structure.java(5.81 ko)80000
org.jmol.api.JmolAdapter.java(59.53 ko)1900190
org.jmol.api.JmolAppletInterface.java(13.16 ko)00000
org.jmol.api.JmolBioResolver.java(4.30 ko)00000
org.jmol.api.JmolExportInterface.java(21.28 ko)00000
org.jmol.api.JmolFileReaderInterface.java(0.56 ko)00000
org.jmol.api.JmolRendererInterface.java(54.81 ko)00000
org.jmol.api.JmolSelectionListener.java(0.43 ko)00000
org.jmol.api.JmolSimpleViewer.java(5.53 ko)00000
org.jmol.api.JmolStatusListener.java(11.18 ko)00000
org.jmol.api.JmolViewer.java(58.31 ko)10100
org.jmol.api.MOCalculationInterface.java(3.28 ko)00000
org.jmol.api.MepCalculationInterface.java(1.28 ko)00000
org.jmol.api.SmilesMatcherInterface.java(1.08 ko)00000
org.jmol.applet.Console.java(44.12 ko)3402941
org.jmol.applet.Jmol.java(251.93 ko)18701561812
org.jmol.applet.JmolAppletControl.java(44.58 ko)2201651
org.jmol.applet.JmolAppletRegistry.java(42.59 ko)3703203
org.jmol.applet.Jvm12.java(9.92 ko)30210
org.jmol.appletwrapper.AppletWrapper.java(72.03 ko)111069356
org.jmol.appletwrapper.ClassPreloader.java(5.50 ko)60321
org.jmol.appletwrapper.WrappedApplet.java(2.01 ko)00000
org.jmol.appletwrapper.WrappedAppletLoader.java(13.51 ko)150753
org.jmol.atomdata.AtomData.java(6.54 ko)170000
org.jmol.atomdata.AtomDataServer.java(1.97 ko)00000
org.jmol.bspt.Bspf.java(13.05 ko)60600
org.jmol.bspt.Bspt.java(3.43 ko)00000
org.jmol.bspt.CubeIterator.java(24.37 ko)33023100
org.jmol.bspt.Element.java(1.26 ko)00000
org.jmol.bspt.Leaf.java(10.29 ko)30201
org.jmol.bspt.Node.java(26.41 ko)2902540
org.jmol.export.AxesGenerator.java(0.10 ko)00000
org.jmol.export.BackboneGenerator.java(0.11 ko)00000
org.jmol.export.BallsGenerator.java(0.71 ko)10001
org.jmol.export.BbcageGenerator.java(0.11 ko)00000
org.jmol.export.CartoonGenerator.java(0.13 ko)00000
org.jmol.export.DipolesGenerator.java(0.12 ko)00000
org.jmol.export.DotsGenerator.java(0.10 ko)00000
org.jmol.export.DrawGenerator.java(0.52 ko)00000
org.jmol.export.EchoGenerator.java(0.10 ko)00000
org.jmol.export.Export3D.java(146.42 ko)40019192
org.jmol.export.FrankGenerator.java(0.11 ko)00000
org.jmol.export.GeoSurfaceGenerator.java(0.12 ko)00000
org.jmol.export.HalosGenerator.java(0.11 ko)00000
org.jmol.export.IsosurfaceGenerator.java(0.53 ko)10001
org.jmol.export.LabelsGenerator.java(0.11 ko)00000
org.jmol.export.LcaoCartoonGenerator.java(0.53 ko)10001
org.jmol.export.MeasuresGenerator.java(0.11 ko)00000
org.jmol.export.MeshRibbonGenerator.java(0.13 ko)00000
org.jmol.export.MolecularOrbitalGenerator.java(0.54 ko)10001
org.jmol.export.PmeshGenerator.java(0.50 ko)10001
org.jmol.export.PolyhedraGenerator.java(0.12 ko)00000
org.jmol.export.RibbonsGenerator.java(0.13 ko)00000
org.jmol.export.RocketsGenerator.java(0.11 ko)00000
org.jmol.export.StarsGenerator.java(0.11 ko)00000
org.jmol.export.SticksGenerator.java(3.57 ko)40301
org.jmol.export.StrandsGenerator.java(0.11 ko)00000
org.jmol.export.TraceGenerator.java(0.11 ko)00000
org.jmol.export.UccageGenerator.java(0.11 ko)00000
org.jmol.export.VectorsGenerator.java(0.12 ko)00000
org.jmol.export. Exporter.java(30.13 ko)2841752
org.jmol.export. MayaExporter.java(38.57 ko)71420
org.jmol.export. PovrayExporter.java(96.04 ko)52131182
org.jmol.export. VrmlExporter.java(41.74 ko)110821
org.jmol.export PovrayExporter.java(96.04 ko)52131182
org.jmol.g3d.Awt3D.java(13.19 ko)70520
org.jmol.g3d.Circle3D.java(58.25 ko)169051640
org.jmol.g3d.Colix3D.java(22.46 ko)50041
org.jmol.g3d.Cylinder3D.java(206.94 ko)3856233560
org.jmol.g3d.Font3D.java(33.27 ko)100450
org.jmol.g3d.Graphics3D.java(385.86 ko)2351821493
org.jmol.g3d.Hermite3D.java(609.01 ko)440434385610
org.jmol.g3d.Line3D.java(243.96 ko)28534412091
org.jmol.g3d.Normix3D.java(77.85 ko)95039542
org.jmol.g3d.Platform3D.java(48.59 ko)2304118
org.jmol.g3d.Rgb16.java(10.19 ko)2731860
org.jmol.g3d.Shade3D.java(36.12 ko)78218490
org.jmol.g3d.Sphere3D.java(0.02 ko)00000
org.jmol.g3d.Swing3D.java(6.46 ko)30300
org.jmol.g3d.Text3D.java(112.39 ko)2750190823
org.jmol.g3d.Triangle3D.java(102.40 ko)107243584
org.jmol.geodesic.EnvelopeCalculation.java(96.70 ko)49022252
org.jmol.geodesic.Geodesic.java(59.08 ko)2701593
org.jmol.i18n.GT.java(79.32 ko)63052101
org.jmol.jvxl.api.MeshDataServer.java(6.06 ko)00000
org.jmol.jvxl.api.VertexDataServer.java(4.48 ko)00000
org.jmol.jvxl.calc.MarchingCubes.java(62.57 ko)3605301
org.jmol.jvxl.calc.MarchingSquares.java(0.29 ko)00000
org.jmol.jvxl.data.JvxlData.java(13.28 ko)400000
org.jmol.jvxl.data.MeshData.java(58.55 ko)35012111
org.jmol.jvxl.data.VolumeData.java(44.67 ko)43314232
org.jmol.jvxl.readers.ApbsReader.java(11.21 ko)80305
org.jmol.jvxl.readers.AtomDataReader.java(3069.48 ko)24675024657153
org.jmol.jvxl.readers.CubeReader.java(5.66 ko)10001
org.jmol.jvxl.readers.IsoFxyReader.java(5.96 ko)20101
org.jmol.jvxl.readers.IsoMOReader.java(22.47 ko)2802701
org.jmol.jvxl.readers.IsoMepReader.java(4.92 ko)20200
org.jmol.jvxl.readers.IsoPlaneReader.java(4.41 ko)20020
org.jmol.jvxl.readers.IsoShapeReader.java(45.51 ko)882516434
org.jmol.jvxl.readers.IsoSolventReader.java(132.25 ko)21791021051
org.jmol.jvxl.readers.JaguarReader.java(16.52 ko)253985
org.jmol.jvxl.readers.JvxlReader.java(232.11 ko)2494146945
org.jmol.jvxl.readers.Parameters.java(95.17 ko)59028283
org.jmol.jvxl.readers.PltFormattedReader.java(12.51 ko)1901153
org.jmol.jvxl.readers.SurfaceGenerator.java(149.14 ko)116010934
org.jmol.jvxl.readers.VolumeDataReader.java(37.89 ko)2724174
org.jmol.jvxl.readers.VolumeFileReader.java(96.27 ko)90060273
org.jmol.jvxl.readers.VoxelReader.java(118.00 ko)46323173
org.jmol.jvxl.readers.XplorReader.java(22.08 ko)1903124
org.jmol.modelset.Atom.java(299.45 ko)9091817854
org.jmol.modelset.AtomCollection.java(366.27 ko)36703122726
org.jmol.modelset.AtomIndexIterator.java(0.60 ko)00000
org.jmol.modelset.AtomIteratorWithinModel.java(4.18 ko)20200
org.jmol.modelset.AtomIteratorWithinSet.java(514.63 ko)40300402820
org.jmol.modelset.Bond.java(34.66 ko)2001181
org.jmol.modelset.BondCollection.java(235.55 ko)7760747236
org.jmol.modelset.BondIterator.java(0.70 ko)00000
org.jmol.modelset.BondIteratorSelected.java(14.34 ko)50500
org.jmol.modelset.BoxInfo.java(19.64 ko)3202804
org.jmol.modelset.CellInfo.java(18.23 ko)80800
org.jmol.modelset.Chain.java(46.92 ko)2107131
org.jmol.modelset.Group.java(59.48 ko)42026132
org.jmol.modelset.Measurement.java(60.69 ko)3211785
org.jmol.modelset.MeasurementPending.java(5.63 ko)10001
org.jmol.modelset.Model.java(32.13 ko)170917
org.jmol.modelset.ModelCollection.java(605.83 ko)663450545109
org.jmol.modelset.ModelLoader.java(0.39 ko)00000
org.jmol.modelset.ModelSet.java(130.03 ko)106082816
org.jmol.modelset.Molecule.java(17.42 ko)170566
org.jmol.modelset.Polymer.java(10.13 ko)00000
org.jmol.modelsetbio.AlphaMonomer.java(25.20 ko)50401
org.jmol.modelsetbio.AlphaPolymer.java(49.84 ko)48010371
org.jmol.modelsetbio.AminoMonomer.java(35.42 ko)2007121
org.jmol.modelsetbio.AminoPolymer.java(76.30 ko)81553212
org.jmol.modelsetbio.BioPolymer.java(129.61 ko)1140891114
org.jmol.modelsetbio.CarbohydrateMonomer.java(5.07 ko)00000
org.jmol.modelsetbio.CarbohydratePolymer.java(0.53 ko)00000
org.jmol.modelsetbio.Helix.java(4.88 ko)00000
org.jmol.modelsetbio.Monomer.java(56.43 ko)48082614
org.jmol.modelsetbio.NucleicMonomer.java(46.42 ko)120534
org.jmol.modelsetbio.NucleicPolymer.java(16.70 ko)100910
org.jmol.modelsetbio.PhosphorusMonomer.java(17.17 ko)60600
org.jmol.modelsetbio.PhosphorusPolymer.java(0.51 ko)00000
org.jmol.modelsetbio.ProteinStructure.java(33.68 ko)2412210
org.jmol.modelsetbio.Quaternion.java(29.83 ko)55129223
org.jmol.modelsetbio.Resolver.java(31.31 ko)2401680
org.jmol.modelsetbio.Sheet.java(16.99 ko)130472
org.jmol.modelsetbio.Turn.java(0.90 ko)00000
org.jmol.popup.JmolPopup.java(189.16 ko)1470852042
org.jmol.popup.JmolPopupAwt.java(36.18 ko)1603013
org.jmol.popup.JmolPopupSwing.java(41.66 ko)2404416
org.jmol.popup.PopupResourceBundle.java(66.29 ko)2101146
org.jmol.quantum.MOCalculation.java(190.80 ko)36815343190
org.jmol.quantum.MepCalculation.java(11.51 ko)70250
org.jmol.quantum.QuantumCalculation.java(16.64 ko)2304181
org.jmol.shape.AtomShape.java(33.02 ko)3902391
org.jmol.shape.Axes.java(17.07 ko)1601303
org.jmol.shape.AxesRenderer.java(28.57 ko)57221340
org.jmol.shape.Balls.java(35.71 ko)5905072
org.jmol.shape.BallsRenderer.java(16.11 ko)3302490
org.jmol.shape.Bbcage.java(4.54 ko)50500
org.jmol.shape.BbcageRenderer.java(3.98 ko)20200
org.jmol.shape.Dots.java(52.34 ko)46026144
org.jmol.shape.DotsRenderer.java(21.05 ko)2001230
org.jmol.shape.Echo.java(28.23 ko)3503302
org.jmol.shape.EchoRenderer.java(9.40 ko)1301300
org.jmol.shape.FontLineShape.java(5.21 ko)30300
org.jmol.shape.FontLineShapeRenderer.java(6.41 ko)20110
org.jmol.shape.Frank.java(7.09 ko)60420
org.jmol.shape.FrankRenderer.java(4.15 ko)80710
org.jmol.shape.Halos.java(6.48 ko)50302
org.jmol.shape.HalosRenderer.java(18.87 ko)1201200
org.jmol.shape.Hover.java(17.34 ko)110911
org.jmol.shape.HoverRenderer.java(11.71 ko)2102100
org.jmol.shape.Labels.java(142.51 ko)105085164
org.jmol.shape.LabelsRenderer.java(28.58 ko)2902630
org.jmol.shape.Measures.java(111.33 ko)770491018
org.jmol.shape.MeasuresRenderer.java(67.26 ko)104287141
org.jmol.shape.Mesh.java(50.86 ko)450942
org.jmol.shape.MeshCollection.java(80.80 ko)8105497
org.jmol.shape.MeshRenderer.java(33.40 ko)1501122
org.jmol.shape.Shape.java(44.21 ko)120340
org.jmol.shape.ShapeRenderer.java(9.22 ko)10001
org.jmol.shape.Stars.java(0.07 ko)00000
org.jmol.shape.StarsRenderer.java(7.63 ko)80800
org.jmol.shape.Sticks.java(46.44 ko)7105876
org.jmol.shape.SticksRenderer.java(92.73 ko)155275771
org.jmol.shape.Text.java(158.88 ko)2040531474
org.jmol.shape.TextShape.java(38.44 ko)5204219
org.jmol.shape.Uccage.java(1.48 ko)00000
org.jmol.shape.UccageRenderer.java(22.89 ko)1101001
org.jmol.shapebio.Backbone.java(18.46 ko)3202552
org.jmol.shapebio.BackboneRenderer.java(10.85 ko)2902810
org.jmol.shapebio.BioShape.java(49.24 ko)43227104
org.jmol.shapebio.BioShapeCollection.java(28.95 ko)2501861
org.jmol.shapebio.BioShapeRenderer.java(124.94 ko)1412547114
org.jmol.shapebio.Cartoon.java(0.38 ko)00000
org.jmol.shapebio.CartoonRenderer.java(32.11 ko)2802602
org.jmol.shapebio.MeshRibbon.java(0.38 ko)00000
org.jmol.shapebio.MeshRibbonRenderer.java(4.61 ko)40121
org.jmol.shapebio.Ribbons.java(0.08 ko)00000
org.jmol.shapebio.RibbonsRenderer.java(1.42 ko)00000
org.jmol.shapebio.Rockets.java(0.40 ko)00000
org.jmol.shapebio.RocketsRenderer.java(71.43 ko)82057232
org.jmol.shapebio.Strands.java(0.24 ko)00000
org.jmol.shapebio.StrandsRenderer.java(7.88 ko)30120
org.jmol.shapebio.Trace.java(0.93 ko)00000
org.jmol.shapebio.TraceRenderer.java(1.37 ko)20101
org.jmol.shapespecial.Dipole.java(35.96 ko)133820
org.jmol.shapespecial.Dipoles.java(133.11 ko)9447578
org.jmol.shapespecial.DipolesRenderer.java(31.86 ko)52338011
org.jmol.shapespecial.Draw.java(261.45 ko)27322091646
org.jmol.shapespecial.DrawMesh.java(17.50 ko)61401
org.jmol.shapespecial.DrawRenderer.java(32.61 ko)3923232
org.jmol.shapespecial.GeoSurface.java(0.60 ko)00000
org.jmol.shapespecial.GeoSurfaceRenderer.java(30.09 ko)40400
org.jmol.shapespecial.Isosurface.java(117.80 ko)1220101714
org.jmol.shapespecial.IsosurfaceMesh.java(37.11 ko)250906
org.jmol.shapespecial.IsosurfaceRenderer.java(30.93 ko)80602
org.jmol.shapespecial.LcaoCartoon.java(44.77 ko)46025021
org.jmol.shapespecial.LcaoCartoonRenderer.java(0.10 ko)00000
org.jmol.shapespecial.MeshFileCollection.java(6.86 ko)00000
org.jmol.shapespecial.MolecularOrbital.java(71.33 ko)73029143
org.jmol.shapespecial.MolecularOrbitalRenderer.java(7.92 ko)70610
org.jmol.shapespecial.Pmesh.java(46.52 ko)2802152
org.jmol.shapespecial.PmeshRenderer.java(0.12 ko)00000
org.jmol.shapespecial.Polyhedra.java(130.17 ko)1691150162
org.jmol.shapespecial.PolyhedraRenderer.java(15.50 ko)1901711
org.jmol.shapespecial.Vectors.java(3.60 ko)20011
org.jmol.shapespecial.VectorsRenderer.java(15.61 ko)112900
org.jmol.symmetry.HallInfo.java(100.82 ko)107010232
org.jmol.symmetry.SpaceGroup.java(17.12 ko)130733
org.jmol.symmetry.SymmetryOperation.java(55.03 ko)5214290
org.jmol.symmetry.UnitCell.java(35.45 ko)5225450
org.jmol.util.ArrayUtil.java(90.26 ko)6205750
org.jmol.util.Base64.java(14.05 ko)90810
org.jmol.util.BinaryDocument.java(6.90 ko)10001
org.jmol.util.BitSetUtil.java(25.81 ko)3102731
org.jmol.util.ColorEncoder.java(86.60 ko)72244214
org.jmol.util.CommandHistory.java(49.09 ko)3102461
org.jmol.util.CompoundDocument.java(79.31 ko)571212411
org.jmol.util.DefaultLogger.java(15.28 ko)10100
org.jmol.util.Escape.java(97.56 ko)8107650
org.jmol.util.Int2IntHash.java(22.08 ko)2602141
org.jmol.util.Int2ObjHash.java(22.85 ko)2402121
org.jmol.util.IntInt2ObjHash.java(222.73 ko)10150101221
org.jmol.util.JpegEncoder.java(182.32 ko)1621061910
org.jmol.util.Logger.java(30.16 ko)170690
org.jmol.util.LoggerInterface.java(3.45 ko)00000
org.jmol.util.Measure.java(18.33 ko)5134170
org.jmol.util.TempArray.java(38.27 ko)90450
org.jmol.util.ZipUtil.java(55.20 ko)84050313
org.jmol.vecmath.Point3fi.java(14.44 ko)140740
org.jmol.viewer.ColorManager.java(100.33 ko)88045421
org.jmol.viewer.Compiler.java(994.50 ko)00000
org.jmol.viewer.DataManager.java(37.27 ko)3603231
org.jmol.viewer.Eval.java(1.04 ko)00000
org.jmol.viewer.FileManager.java(187.74 ko)119195116
org.jmol.viewer.FrameExportJmolAdapter.java(21.33 ko)00000
org.jmol.viewer.FrameRenderer.java(29.15 ko)1901630
org.jmol.viewer.Function.java(9.44 ko)120813
org.jmol.viewer.JmolConstants.java(182.27 ko)130052454
org.jmol.viewer.ModelManager.java(16.38 ko)100604
org.jmol.viewer.MouseManager.java(153.01 ko)127528877
org.jmol.viewer.MouseManager10.java(15.72 ko)1001000
org.jmol.viewer.MouseManager11.java(7.06 ko)30102
org.jmol.viewer.MouseManager14.java(3.13 ko)40301
org.jmol.viewer.MouseWrapper11.java(1.17 ko)00000
org.jmol.viewer.MouseWrapper14.java(1.17 ko)00000
org.jmol.viewer.PickingManager.java(45.35 ko)31014314
org.jmol.viewer.PropertyManager.java(118.01 ko)1120100120
org.jmol.viewer.RepaintManager.java(99.55 ko)751282422
org.jmol.viewer.ScriptManager.java(26.51 ko)110713
org.jmol.viewer.SelectionManager.java(43.81 ko)1601204
org.jmol.viewer.StateManager.java(0.43 ko)00000
org.jmol.viewer.StatusManager.java(81.57 ko)2902405
org.jmol.viewer.Token.java(241.86 ko)2000177173
org.jmol.viewer.TransformManager.java(339.45 ko)275281139241
org.jmol.viewer.TransformManager10.java(11.17 ko)73220
org.jmol.viewer.TransformManager11.java(0.24 ko)00000
org.jmol.viewer.Viewer.java(1179.24 ko)80806817353
Number of files : 295